displayGraph

Description

This method transmits the CytoscapeWindowClass's graph data, from R to Cytoscape: nodes, edges, node and edge attributes, and displays it in a window titled as specified by the objects 'title' slot. With large graphs, this transmission may take a while. (todo: provide a few timing examples.) The resulting view, in Cytoscape, of the network will need layout and vizmap rendering; layout so that all the nodes and edges can be seen; rendering so that data attributes can control the appearance of the the nodes and edges.

Usage

displayGraph(obj)

Arguments

Value

Nothing.

Author(s)

Paul Shannon

Examples

  cw <- CytoscapeWindow ('displayGraph.test', graph=makeSimpleGraph())
  displayGraph (cw)
  layoutNetwork (cw, 'jgraph-spring')
  redraw (cw)