getLayoutNameMapping

Description

The Cytoscape 'Layout' menu lists many layout algorithms, but the names presented there are different from the names by which these algorithms are known to layoutNetwork method. This method returns a named list in which the names are from the GUI, and the values identify the names you must use to choose an algorithms in the programmatic interface.

Usage

getLayoutNameMapping(obj)

Arguments

Value

A named list of strings.

Author(s)

Paul Shannon

See Also

layoutNetwork getLayoutNames getLayoutPropertyNames getLayoutPropertyType getLayoutPropertyValue setLayoutProperties

Examples

  cy <- CytoscapeConnection ()
  layout.name.map <- getLayoutNameMapping (cy)
  print (head (names (layout.name.map), n=3))
    # [1] "Inverted Self-Organizing Map Layout" "Group Attributes Layout" "MOEN Layout"
  print (head (as.character (layout.name.map), n=3))
    # [1] "isom"   "attributes-layout"   "jgraph-moen"