Functions
addCyEdge
addCyNode
addGraphToGraph
clearMsg
clearSelection
copyVisualStyle
createWindowFromSelection
createWindow
cy2.edge.names
CytoscapeConnectionClass-class
CytoscapeConnection
CytoscapeWindowClass-class
CytoscapeWindow
deleteAllWindows
deleteEdgeAttribute
deleteNodeAttribute
deleteSelectedEdges
deleteSelectedNodes
deleteWindow
demoSimpleGraph
displayGraph
dockPanel
eda
eda.names
existing.CytoscapeWindow
fitContent
fitSelectedContent
floatPanel
getAllEdgeAttributes
getAllEdges
getAllNodeAttributes
getAllNodes
getArrowShapes
getAttributeClassNames
getCenter
getDefaultBackgroundColor
getDefaultEdgeReverseSelectionColor
getDefaultEdgeSelectionColor
getDefaultNodeReverseSelectionColor
getDefaultNodeSelectionColor
getDirectlyModifiableVisualProperties
getEdgeAttribute
getEdgeAttributeNames
getEdgeCount
getFirstNeighbors
getGraphFromCyWindow
getGraph
getLayoutNameMapping
getLayoutNames
getLayoutPropertyNames
getLayoutPropertyType
getLayoutPropertyValue
getLineStyles
getNodeAttribute
getNodeAttributeNames
getNodeCount
getNodeShapes
getPosition
getSelectedEdgeCount
getSelectedEdges
getSelectedNodeCount
getSelectedNodes
getViewCoordinates
getVisualStyleNames
getWindowCount
getWindowID
getWindowList
getZoom
hideAllPanels
hideNodes
hidePanel
hideSelectedEdges
hideSelectedNodes
initEdgeAttribute
initNodeAttribute
invertEdgeSelection
invertNodeSelection
layoutNetwork
lockNodeDimensions
makeRandomGraph
makeSimpleGraph
msg
new.CytoscapeWindow
noa
noa.names
ping
pluginVersion
raiseWindow
redraw
restoreLayout
saveImage
saveLayout
saveNetwork
selectEdges
selectFirstNeighborsOfSelectedNodes
selectNodes
sendEdges
sendNodes
setCenter
setDefaultBackgroundColor
setDefaultEdgeColor
setDefaultEdgeLineWidth
setDefaultEdgeReverseSelectionColor
setDefaultEdgeSelectionColor
setDefaultNodeBorderColor
setDefaultNodeBorderWidth
setDefaultNodeColor
setDefaultNodeFontSize
setDefaultNodeLabelColor
setDefaultNodeReverseSelectionColor
setDefaultNodeSelectionColor
setDefaultNodeShape
setDefaultNodeSize
setEdgeAttributesDirect
setEdgeAttributes
setEdgeColorDirect
setEdgeColorRule
setEdgeFontSizeDirect
setEdgeLabelColorDirect
setEdgeLabelDirect
setEdgeLabelOpacityDirect
setEdgeLabelRule
setEdgeLabelWidthDirect
setEdgeLineStyleDirect
setEdgeLineStyleRule
setEdgeLineWidthDirect
setEdgeLineWidthRule
setEdgeOpacityDirect
setEdgeSourceArrowColorDirect
setEdgeSourceArrowColorRule
setEdgeSourceArrowOpacityDirect
setEdgeSourceArrowRule
setEdgeSourceArrowShapeDirect
setEdgeTargetArrowColorDirect
setEdgeTargetArrowColorRule
setEdgeTargetArrowOpacityDirect
setEdgeTargetArrowRule
setEdgeTargetArrowShapeDirect
setEdgeTooltipDirect
setEdgeTooltipRule
setGraph
setLayoutProperties
setNodeAttributes
setNodeAttributesDirect
setNodeBorderColorRule
setNodeBorderOpacityDirect
setNodeBorderWidthRule
setNodeColorDirect
setNodeColorRule
setNodeFillOpacityDirect
setNodeFontSizeDirect
setNodeHeightDirect
setNodeImageDirect
setNodeLabelDirect
setNodeLabelColorDirect
setNodeLabelOpacityDirect
setNodeLabelRule
setNodeOpacityDirect
setNodePosition
setNodeShapeDirect
setNodeShapeRule
setNodeSizeDirect
setNodeSizeRule
setNodeTooltipRule
setNodeWidthDirect
setTooltipDismissDelay
setTooltipInitialDelay
setVisualStyle
setWindowSize
setZoom
showGraphicsDetails
unhideAll
unhideNodes
validCyWin