new.CytoscapeWindowR Documentation

new.CytoscapeWindow

Description

The constructor for the CytoscapeWindowClass

Usage

new.CytoscapeWindow(title, graph = new("graphNEL", edgemode='directed'), host = "localhost", rpcPort = 9000, create.window = TRUE)

Arguments

title A character string, this is the name you will see on the Cytoscape network window. Multiple windows with the same name are not permitted.
graph A Bioconductor graph.
host Defaults to 'localhost', this is the domain name of a machine which is running Cytoscape with the appropriate XMLRPC server plugin.
rpcPort Defaults to 9000, this may be any port to which the CytoscapeRPC server is listening.
create.window Defaults to TRUE, but if you want a CytoscapeWindow just to call what in Java we would call 'class methods' – getWindowList () for instance, a CytoscapeWindow without an actual window can be useful.

Value

An object of the CytoscapeWindow Class.

Author(s)

Paul Shannon

See Also

CytoscapeWindow existing.CytoscapeWindow

Examples

  cw <- new.CytoscapeWindow ('new.demo', new ('graphNEL'))