setEdgeSourceArrowRuleR Documentation

specify the arrow types to be used at the end of an edge, at the 'source' node

Description

Specify how data attributes – for the specified named attribute – are mapped to the source arrow type.

Usage

setEdgeSourceArrowRule(obj, edge.attribute.name, attribute.values, arrows, default='Arrow')

Arguments

obj a CytoscapeWindowClass object.
edge.attribute.name the edge attribute whose values will, when this rule is applied, determine the sourceArrow of each edge.
attribute.values A list of scalar, discrete values. For instance, interaction types: 'phosphorylates', 'ubiquinates', 'represses', 'activates'
arrows One arrow type for each of the attribute.values
default The arrow type to use when an explicit mapping is not provided.

Value

None.

Author(s)

Paul Shannon

See Also

getArrowShapes

Examples

  cw <- new.CytoscapeWindow ('setEdgeSourceArrowRule.test', graph=makeSimpleGraph())
  arrows <- c ('Arrow', 'Diamond', 'Circle')
  edgeType.values <- c ('phosphorylates', 'synthetic lethal', 'undefined')
  setEdgeSourceArrowRule (cw, 'edgeType', edgeType.values, arrows)
  redraw (cw)